STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rnf114E3 ubiquitin-protein ligase RNF114. (228 aa)    
Predicted Functional Partners:
Ppp2r1a
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform.
   
 0.679
Cylc1
Cylicin-1.
   
  
 0.579
Ube2l6
Ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1.
   
 0.517
Parp11
Poly [ADP-ribose] polymerase 11 isoform X1.
    
 0.513
Klhl28
Kelch-like protein 28.
    
 
 0.485
Ube2w
Ubiquitin-conjugating enzyme E2 W isoform X1.
    
 0.463
Ubqln4
Ubiquilin-4.
   
 0.463
Lrsam1
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase LRSAM1.
    
 0.458
Coro7
Coronin-7 isoform X1.
   
  
 0.447
Rnf4
Ring finger protein 4.
   
 
 0.446
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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