STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mrpl1839S ribosomal protein L18, mitochondrial isoform X1. (176 aa)    
Predicted Functional Partners:
Mrpl44
39S ribosomal protein L44, mitochondrial.
   
 
 0.861
Mrpl4
39S ribosomal protein L4, mitochondrial.
   
   0.850
Mrpl40
39S ribosomal protein L40, mitochondrial.
   
   0.843
Mrpl15
39S ribosomal protein L15, mitochondrial.
   
 
 0.840
Mrpl38
39S ribosomal protein L38, mitochondrial.
   
 
 0.837
Mrpl20
39S ribosomal protein L20, mitochondrial.
   
   0.832
Mrpl58
Peptidyl-tRNA hydrolase ICT1, mitochondrial.
   
   0.824
Mrpl13
39S ribosomal protein L13, mitochondrial.
   
   0.816
Mrpl27
39S ribosomal protein L27, mitochondrial.
   
   0.814
Mrps25
28S ribosomal protein S25, mitochondrial.
   
 
 0.812
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.