STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mrpl4239S ribosomal protein L42, mitochondrial. (141 aa)    
Predicted Functional Partners:
Mrpl32
39S ribosomal protein L32, mitochondrial.
   
 
 0.911
Mrps18a
28S ribosomal protein S18a, mitochondrial.
   
 
 0.908
Mrpl43
39S ribosomal protein L43, mitochondrial.
    
   0.907
Mrpl41
39S ribosomal protein L41, mitochondrial.
   
 
 0.899
Mrpl20
39S ribosomal protein L20, mitochondrial.
   
 
 0.896
Mrpl40
39S ribosomal protein L40, mitochondrial.
   
 
 0.891
Mrpl37
39S ribosomal protein L37, mitochondrial.
    
 
 0.887
Mrpl16
39S ribosomal protein L16, mitochondrial.
    
 0.887
Chchd1
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1.
   
 
 0.886
Mrpl33
39S ribosomal protein L33, mitochondrial.
   
 
 0.884
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.