STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lyl1Protein lyl-1 isoform X1. (284 aa)    
Predicted Functional Partners:
Tcf3
Transcription factor E2-alpha isoform X1.
   
 0.974
Lmo2
Rhombotin-2 isoform X1.
   
 0.790
Ldb1
LOW QUALITY PROTEIN: LIM domain-binding protein 1.
    
 0.772
Cbfb
Core-binding factor subunit beta isoform X1.
     
 0.695
Gata2
Endothelial transcription factor GATA-2.
   
 0.644
Ldb2
LIM domain-binding protein 2.
    
 0.585
Gata1
GATA binding protein 1.
   
 0.531
ENSCCNP00000002887
annotation not available
   
 0.521
Tcf12
Transcription factor 12 isoform X1.
   
 0.521
ENSCCNP00000011728
annotation not available
   
 0.521
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.