STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phf3PHD finger protein 3 isoform X1. (2005 aa)    
Predicted Functional Partners:
Nipbl
Cohesin loading factor subunit SCC2.
   
  
 0.909
Polr2a
DNA-directed RNA polymerase II subunit RPB1.
    
 0.877
Polr2e
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.823
ENSCCNP00000000380
Ubiquitin carboxyl-terminal hydrolase 34-like.
   
 
  0.762
Setd2
[histone H3]-dimethyl-L-lysine36 N-methyltransferase.
   
  
 0.753
ENSCCNP00000024670
annotation not available
   
    0.729
Polr2c
DNA-directed RNA polymerase II subunit RPB3.
    
  0.709
Polr2i
DNA-directed RNA polymerase II subunit RPB9 isoform X1.
    
 0.685
Polr2b
DNA-directed RNA polymerase II subunit RPB2.
   
 0.674
Polr2j
DNA-directed RNA polymerase II subunit RPB11-a.
    
 0.664
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.