STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slc10a1Solute carrier family 10 (sodium/bile acid cotransporter), member 1. (364 aa)    
Predicted Functional Partners:
Slco1b2
Solute carrier organic anion transporter family member 1B3.
   
  
 0.719
Abcb11
ATP-binding cassette, subfamily B (MDR/TAP), member 11.
   
  
 0.659
Cyp7a1
Cholesterol 7-alpha-monooxygenase.
   
  
 0.642
Slco1a2
Solute carrier organic anion transporter family member 1A2.
   
  
 0.608
Nr1h4
Bile acid receptor isoform X1.
   
  
 0.598
Plekhd1
Pleckstrin homology domain-containing family D member 1.
      
 0.575
ENSCCNP00000005455
Solute carrier family 10 (sodium/bile acid cotransporter), member 7.
      
 0.570
Nr0b2
Nuclear receptor subfamily 0 group B member 2.
   
  
 0.561
Fabp6
Fatty acid-binding protein 6, ileal (gastrotropin).
   
  
 0.546
ENSCCNP00000006295
annotation not available
   
  
 0.515
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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