STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppil6Peptidyl-prolyl cis-trans isomerase-like 6. (309 aa)    
Predicted Functional Partners:
Syf2
Pre-mRNA-splicing factor SYF2.
    
 0.765
Nktr
Natural killer tumor recognition sequence.
 
  
 0.742
ENSCCNP00000015604
Peptidyl-prolyl isomerase G (cyclophilin G).
 
  
 0.640
Prpf19
Pre-mRNA-processing factor 19.
    
 0.611
Xab2
Pre-mRNA-splicing factor SYF1 isoform X1.
   
 0.609
Snw1
LOW QUALITY PROTEIN: SNW domain-containing protein 1.
    
 0.602
Rangap1
Ran GTPase-activating protein 1 isoform X1.
   
 0.584
Nup88
Nuclear pore complex protein Nup88 isoform X1.
    
 0.575
Crnkl1
Crooked neck-like protein 1.
   
 0.570
Rsph3
Radial spoke head protein 3 homolog.
   
 
 0.560
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.