STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppm1nProbable protein phosphatase 1N. (404 aa)    
Predicted Functional Partners:
Ghrh
LOW QUALITY PROTEIN: somatoliberin.
   
    0.618
Isg15
Ubiquitin cross-reactive protein.
   
 0.615
Slc3a1
Neutral and basic amino acid transport protein rBAT.
 
 
  
 0.515
Ppm1a
Protein phosphatase 1A.
  
  
0.484
Mtfmt
LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase, mitochondrial.
  
   0.475
Chuk
Inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1.
   
 0.472
Smad4
Mothers against decapentaplegic homolog 4 isoform X1.
   
 0.468
ENSCCNP00000016078
annotation not available
   
  
0.464
ENSCCNP00000017097
annotation not available
   
   0.464
Ubb
LOW QUALITY PROTEIN: polyubiquitin-B.
   
 0.460
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.