STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCCNP00000022100Probable ATP-dependent RNA helicase DHX34. (672 aa)    
Predicted Functional Partners:
Dhx34
Probable ATP-dependent RNA helicase DHX34.
 
      0.900
Slu7
Pre-mRNA-processing factor SLU7.
   
 0.817
ENSCCNP00000017772
annotation not available
   
 0.806
Syf2
Pre-mRNA-splicing factor SYF2.
    
 0.791
Ddx49
Probable ATP-dependent RNA helicase DDX49.
   
 0.789
Utp14a
U3 small nucleolar RNA-associated protein 14 homolog A.
   
 0.786
Utp3
LOW QUALITY PROTEIN: something about silencing protein 10.
   
 0.783
Ccdc94
Coiled-coil domain-containing protein 94.
   
 0.783
ENSCCNP00000009127
Digestive organ expansion factor homolog.
   
 0.774
Prpf18
Pre-mRNA-splicing factor 18 isoform X1.
   
 0.768
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.