STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp9xProbable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1. (2522 aa)    
Predicted Functional Partners:
Smad4
Mothers against decapentaplegic homolog 4 isoform X1.
   
 0.779
Ddb2
DNA damage-binding protein 2 isoform X1.
    
 0.766
Uty
Ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome.
   
 
 0.721
Mcl1
Induced myeloid leukemia cell differentiation protein Mcl-1 isoform X1.
    
 
 0.716
Kdm5d
LOW QUALITY PROTEIN: lysine-specific demethylase 5D-like.
   
 
 0.706
Pex5
Peroxisomal biogenesis factor 5.
    
 0.692
Itsn2
Intersectin 2.
   
 
  0.656
ENSCCNP00000010977
annotation not available
   
 
  0.653
ENSCCNP00000019524
Intersectin-2-like isoform X1.
   
 
  0.653
Wdr76
WD repeat-containing protein 76.
    
 0.645
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.