STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam187aIg-like V-type domain-containing protein FAM187A. (413 aa)    
Predicted Functional Partners:
Uba52
Ubiquitin-60S ribosomal protein L40 isoform X1.
    
 0.585
Higd1b
HIG1 domain family member 1B.
      
 0.575
Lgr4
Leucine-rich repeat-containing G-protein coupled receptor 4 isoform X1.
    
 0.430
Lgr5
Leucine-rich repeat-containing G-protein coupled receptor 5 isoform X1.
    
 0.430
Rxfp1
Relaxin family peptide receptor 1.
    
 0.430
Rxfp2
Relaxin family peptide receptor 2.
    
 0.430
ENSCCNP00000008906
annotation not available
    
 0.414
ENSCCNP00000012848
annotation not available
    
 0.414
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.414
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.