STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbr1LOW QUALITY PROTEIN: lariat debranching enzyme. (540 aa)    
Predicted Functional Partners:
Dhx38
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16.
    
 
 0.843
Xpo5
Exportin-5.
   
  
 0.706
Cwf19l1
CWF19-like protein 1 isoform X1.
   
 
0.624
Gpatch11
G patch domain-containing protein 11.
   
 
 0.624
Prpf18
Pre-mRNA-splicing factor 18 isoform X1.
    
 
 0.604
ENSCCNP00000007374
Ribonuclease 3-like.
   
  
 0.602
Cwf19l2
CWF19-like protein 2 isoform X1.
   
  
 0.579
Dicer1
Endoribonuclease Dicer isoform X1.
   
  
 0.578
Xab2
Pre-mRNA-splicing factor SYF1 isoform X1.
   
  
 0.565
Supt5
Transcription elongation factor SPT5.
      
 0.521
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.