Ncmap protein (Castor canadensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

Ncmap

Noncompact myelin-associated protein. (101 aa)

Predicted Functional Partners:

ENSCCNP00000017715

0.902

ENSCCNP00000000273

0.858

Upf2

0.855

Tcerg1

0.839

Sf3b1

0.818

Prpf38a

0.811

Pnn

0.805

ENSCCNP00000008905

0.803

Upf3b

0.803

Ncbp1

0.786

Your Current Organism:

Castor canadensis

NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCCNP00000000273	ENSCCNP00000008905	ENSCCNP00000000273	ENSCCNP00000008905	E3 SUMO-protein ligase RanBP2-like isoform X1.	annotation not available	0.878
ENSCCNP00000000273	Ncbp1	ENSCCNP00000000273	ENSCCNP00000017509	E3 SUMO-protein ligase RanBP2-like isoform X1.	Nuclear cap-binding protein subunit 1.	0.902
ENSCCNP00000000273	Ncmap	ENSCCNP00000000273	ENSCCNP00000023084	E3 SUMO-protein ligase RanBP2-like isoform X1.	Noncompact myelin-associated protein.	0.858
ENSCCNP00000000273	Sf3b1	ENSCCNP00000000273	ENSCCNP00000031128	E3 SUMO-protein ligase RanBP2-like isoform X1.	Splicing factor 3B subunit 1 isoform X1.	0.453
ENSCCNP00000000273	Upf3b	ENSCCNP00000000273	ENSCCNP00000013786	E3 SUMO-protein ligase RanBP2-like isoform X1.	Regulator of nonsense transcripts 3B.	0.878
ENSCCNP00000008905	ENSCCNP00000000273	ENSCCNP00000008905	ENSCCNP00000000273	annotation not available	E3 SUMO-protein ligase RanBP2-like isoform X1.	0.878
ENSCCNP00000008905	Ncbp1	ENSCCNP00000008905	ENSCCNP00000017509	annotation not available	Nuclear cap-binding protein subunit 1.	0.781
ENSCCNP00000008905	Ncmap	ENSCCNP00000008905	ENSCCNP00000023084	annotation not available	Noncompact myelin-associated protein.	0.803
ENSCCNP00000008905	Pnn	ENSCCNP00000008905	ENSCCNP00000033645	annotation not available	Pinin.	0.717
ENSCCNP00000008905	Sf3b1	ENSCCNP00000008905	ENSCCNP00000031128	annotation not available	Splicing factor 3B subunit 1 isoform X1.	0.422
ENSCCNP00000008905	Upf2	ENSCCNP00000008905	ENSCCNP00000008459	annotation not available	Regulator of nonsense transcripts 2.	0.957
ENSCCNP00000017715	Ncbp1	ENSCCNP00000017715	ENSCCNP00000017509	RNA-binding protein 25-like.	Nuclear cap-binding protein subunit 1.	0.945
ENSCCNP00000017715	Ncmap	ENSCCNP00000017715	ENSCCNP00000023084	RNA-binding protein 25-like.	Noncompact myelin-associated protein.	0.902
ENSCCNP00000017715	Pnn	ENSCCNP00000017715	ENSCCNP00000033645	RNA-binding protein 25-like.	Pinin.	0.675
ENSCCNP00000017715	Prpf38a	ENSCCNP00000017715	ENSCCNP00000005890	RNA-binding protein 25-like.	Pre-mRNA-splicing factor 38A isoform X1.	0.501
ENSCCNP00000017715	Sf3b1	ENSCCNP00000017715	ENSCCNP00000031128	RNA-binding protein 25-like.	Splicing factor 3B subunit 1 isoform X1.	0.910
ENSCCNP00000017715	Tcerg1	ENSCCNP00000017715	ENSCCNP00000032610	RNA-binding protein 25-like.	Transcription elongation regulator 1 isoform X1.	0.874
Ncbp1	ENSCCNP00000000273	ENSCCNP00000017509	ENSCCNP00000000273	Nuclear cap-binding protein subunit 1.	E3 SUMO-protein ligase RanBP2-like isoform X1.	0.902
Ncbp1	ENSCCNP00000008905	ENSCCNP00000017509	ENSCCNP00000008905	Nuclear cap-binding protein subunit 1.	annotation not available	0.781
Ncbp1	ENSCCNP00000017715	ENSCCNP00000017509	ENSCCNP00000017715	Nuclear cap-binding protein subunit 1.	RNA-binding protein 25-like.	0.945