STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fgd6FYVE, RhoGEF and PH domain-containing protein 6. (1427 aa)    
Predicted Functional Partners:
Uhmk1
LOW QUALITY PROTEIN: serine/threonine-protein kinase Kist.
      
 0.574
ENSCCNP00000030340
annotation not available
     
 0.564
Gcsam
Germinal center-associated signaling and motility protein.
      
 0.509
Arhgef16
Rho guanine nucleotide exchange factor 16.
   
  
0.474
Ggt5
Gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase.
      
 0.457
Micu2
Calcium uptake protein 2, mitochondrial.
   
 0.454
ENSCCNP00000032767
Calcium uptake protein 1, mitochondrial-like.
   
 0.454
ENSCCNP00000004466
annotation not available
      
 0.448
Syt1
Synaptotagmin-1.
      
 0.447
Mcub
Calcium uniporter regulatory subunit MCUb, mitochondrial isoform X1.
   
 
 0.440
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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