STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcl11aB-cell lymphoma/leukemia 11A isoform X1. (772 aa)    
Predicted Functional Partners:
ENSCCNP00000007948
B-cell lymphoma/leukemia 11B-like isoform X1.
 
 
 
 0.945
Mta1
Metastasis-associated protein MTA1 isoform X1.
    
 0.744
Rbbp7
Histone-binding protein RBBP7.
    
 0.676
Hdac1
Histone deacetylase 1/2.
    
 0.616
Sox6
Transcription factor SOX5/6/13 (SOX group D).
    
 
 0.606
Gata1
GATA binding protein 1.
    
 0.602
ENSCCNP00000004142
annotation not available
    
 0.601
Rbbp4
Histone-binding protein RBBP4.
    
 0.601
ENSCCNP00000006937
DNA (cytosine-5)-methyltransferase 1-like.
   
 0.588
Kdm1a
Lysine (K)-specific demethylase 1A.
    
 0.572
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.