STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab40bRas-related protein Rab-40B. (279 aa)    
Predicted Functional Partners:
Wdr45b
WD repeat domain phosphoinositide-interacting protein 3 isoform X1.
 
 
  
 0.608
ENSCCNP00000010280
Rab proteins geranylgeranyltransferase component A 1-like.
    
 0.561
Rabggtb
Geranylgeranyl transferase type-2 subunit beta.
    
 0.538
Rilpl2
RILP-like protein 2.
    
 
 0.534
Gdi1
Rab GDP dissociation inhibitor alpha.
   
 0.532
Gdi2
Rab GDP dissociation inhibitor beta.
   
 0.532
Mthfsd
Methenyltetrahydrofolate synthetase domain containing.
   
    0.531
ENSCCNP00000013021
Exocyst complex component 4-like.
    
 0.526
Rab3ip
Rab-3A-interacting protein.
    
 0.525
Rab3il1
RAB3A interacting protein (rabin3)-like 1.
    
 0.525
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.