STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BrdtBromodomain testis-specific protein. (327 aa)    
Predicted Functional Partners:
Taf7
Transcription initiation factor TFIID subunit 7.
    
 
 0.711
Dmap1
DNA methyltransferase 1-associated protein 1 isoform X1.
    
 
 0.603
E2f1
LOW QUALITY PROTEIN: transcription factor E2F1.
    
 
 0.568
Cdk9
LOW QUALITY PROTEIN: cyclin-dependent kinase 9.
   
 
 0.565
Nsd3
Histone-lysine N-methyltransferase NSD3 isoform X1.
   
 
 0.563
Taf1
TATA-box binding protein associated factor 1.
    
 
0.561
Jmjd6
Jumonji domain containing 6.
    
 
 0.558
Ep300
Histone acetyltransferase p300.
   
0.507
Yeats4
YEATS domain-containing protein 4 isoform X1.
    
 
 0.490
Ccnt1
Cyclin-T1.
   
 
 0.468
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.