STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ryr1LOW QUALITY PROTEIN: ryanodine receptor 1. (5056 aa)    
Predicted Functional Partners:
Calml3
Calmodulin-like protein 3.
    
 0.981
Calml4
Calmodulin-like protein 4.
    
 0.976
Ryr3
Ryanodine receptor 3.
  
 
0.965
Casq1
Calsequestrin 1.
   
 0.959
Calml5
Calmodulin-like protein 5.
    
 0.955
Calm3
Calmodulin.
    
 0.955
Casq2
Calsequestrin 2.
   
 0.947
Fkbp1a
Peptidyl-prolyl cis-trans isomerase FKBP1A.
    
 0.928
Asph
Aspartyl/asparaginyl beta-hydroxylase-like.
   
 
 0.926
Cacna1a
LOW QUALITY PROTEIN: voltage-dependent P/Q-type calcium channel subunit alpha-1A.
   
 0.923
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.