STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCCNP00000027755HLA class II histocompatibility antigen, DM alpha chain isoform X1. (260 aa)    
Predicted Functional Partners:
ENSCCNP00000027757
HLA class II histocompatibility antigen, DM beta chain.
 
 
 0.999
H2-Ea-ps
HLA class II histocompatibility antigen, DR alpha chain.
   
0.993
ENSCCNP00000027743
HLA class II histocompatibility antigen, DP alpha 1 chain.
   
0.986
Cd74
HLA class II histocompatibility antigen gamma chain isoform X1.
   
 0.984
H2-Ob
HLA class II histocompatibility antigen, DO beta chain.
   
 0.936
ENSCCNP00000027739
HLA class II histocompatibility antigen, DP beta 1 chain.
   
 0.926
Cd4
T-cell surface glycoprotein CD4.
     
 0.919
H2-Ab1
Rano class II histocompatibility antigen, A beta chain-like.
   
 0.883
H2-Oa
HLA class II histocompatibility antigen, DO alpha chain.
  
0.877
ENSCCNP00000014050
HLA class II histocompatibility antigen, DRB1-4 beta chain-like.
   
 0.864
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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