STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcn6Epididymal-specific lipocalin-6. (175 aa)    
Predicted Functional Partners:
ENSCCNP00000029445
Parafibromin.
   
 0.553
Cst11
Cystatin-11.
  
   
 0.540
C8b
Complement component C8 beta chain isoform X1.
   
 0.497
Paf1
Paf1, RNA polymerase II complex component.
   
 0.494
Cinp
Cyclin-dependent kinase 2-interacting protein.
    
 0.458
Ctr9
RNA polymerase-associated protein CTR9 homolog isoform X1.
    
 0.458
Lcn9
Epididymal-specific lipocalin-9.
   
 
 0.441
Lcn10
Epididymal-specific lipocalin-10-like.
 
  
0.426
Rtf1
RNA polymerase-associated protein RTF1 homolog.
    
 0.418
Teddm1
LOW QUALITY PROTEIN: transmembrane epididymal protein 1.
      
 0.406
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.