STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ist1Vacuolar protein sorting-associated protein IST1. (366 aa)    
Predicted Functional Partners:
Vta1
Vacuolar protein sorting-associated protein VTA1 homolog.
   
 
 0.969
Chmp2a
Charged multivesicular body protein 2A.
    
 0.950
Chmp5
Charged multivesicular body protein 5.
    
 
 0.949
ENSCCNP00000024260
Charged multivesicular body protein 3.
    
 0.946
Vps4b
Vacuolar protein sorting-associated protein 4B.
   
 0.945
Vps4a
Vacuolar protein sorting-associated protein 4A isoform X1.
   
 0.943
Chmp7
Charged multivesicular body protein 7.
    
 0.908
Spast
Spastin.
    
 0.904
Spg20
Spartin.
    
 
 0.879
2610002M06Rik
Charged multivesicular body protein 1b-2-like.
    
 
 0.844
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.