STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pdlim3PDZ and LIM domain protein 3 isoform X1. (364 aa)    
Predicted Functional Partners:
Scn8a
Sodium channel protein type 8 subunit alpha isoform X1.
      
 0.720
Actn2
LOW QUALITY PROTEIN: alpha-actinin-2.
   
 
 0.674
Sorbs2
Sorbin and SH3 domain containing 2.
 
  
 0.611
Atox1
Copper transport protein ATOX1 isoform X1.
      
 0.609
Clcn2
Chloride channel protein 2.
   
 
 0.607
Adcy1
LOW QUALITY PROTEIN: adenylate cyclase type 1.
      
 0.597
ENSCCNP00000003424
Transient receptor potential cation channel subfamily M member 6-like.
   
  
 0.581
Cacna1g
LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1G.
   
  
 0.576
Icam2
Intercellular adhesion molecule 2-like.
      
 0.570
Cckbr
Gastrin/cholecystokinin type B receptor isoform X1.
      
 0.569
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.