STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pafah1b1Platelet-activating factor acetylhydrolase IB subunit alpha. (410 aa)    
Predicted Functional Partners:
Pafah1b2
Platelet-activating factor acetylhydrolase IB subunit beta/gamma.
    
 0.996
Pafah1b3
Platelet-activating factor acetylhydrolase IB subunit beta/gamma.
    
 0.994
Nudc
Nuclear migration protein nudC.
   
 0.945
Pafah2
Platelet-activating factor acetylhydrolase 2, cytoplasmic isoform X1.
     
 0.944
Nde1
Nuclear distribution protein nudE homolog 1 isoform X1.
    
 
 0.936
Dctn2
Dynactin subunit 2 isoform X1.
    
 0.931
Dync1h1
LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.
   
 0.930
Pla2g7
Platelet-activating factor acetylhydrolase.
     
 0.923
Ndel1
Nuclear distribution protein nudE-like 1 isoform X1.
    
 
 0.919
Lpcat4
Lysophospholipid acyltransferase LPCAT4.
     
  0.900
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.