STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dhx16Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (1044 aa)    
Predicted Functional Partners:
Gpkow
G patch domain and KOW motifs.
   
 0.994
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 0.990
Cdc5l
Cell division cycle 5-like protein isoform X1.
 
 
 0.987
Xab2
Pre-mRNA-splicing factor SYF1 isoform X1.
   
 0.984
Sf3b2
LOW QUALITY PROTEIN: splicing factor 3B subunit 2.
   
 0.984
Sf3b3
Splicing factor 3B subunit 3 isoform X1.
   
 0.977
Sf3b1
Splicing factor 3B subunit 1 isoform X1.
   
 0.976
Cwc27
Peptidyl-prolyl cis-trans isomerase CWC27 homolog.
   
 0.972
Dhx38
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16.
  
 
0.969
Phf5a
PHD finger-like domain-containing protein 5A.
   
 0.966
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.