STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCCNP00000030302annotation not available (75 aa)    
Predicted Functional Partners:
Prpf19
Pre-mRNA-processing factor 19.
    
 0.611
Xab2
Pre-mRNA-splicing factor SYF1 isoform X1.
   
 0.609
Snw1
LOW QUALITY PROTEIN: SNW domain-containing protein 1.
    
 0.602
Rangap1
Ran GTPase-activating protein 1 isoform X1.
   
 0.584
Nup88
Nuclear pore complex protein Nup88 isoform X1.
    
 0.575
Crnkl1
Crooked neck-like protein 1.
   
 0.570
Bud31
Bud site selection protein 31.
   
 0.553
Sod2
Superoxide dismutase [Mn], mitochondrial.
   
 
 0.550
Nup205
LOW QUALITY PROTEIN: nuclear pore complex protein Nup205.
   
 0.541
Pin1
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1.
   
 0.541
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.