STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddx42ATP-dependent RNA helicase DDX42. (931 aa)    
Predicted Functional Partners:
Sf3b1
Splicing factor 3B subunit 1 isoform X1.
   
 0.999
Sf3b3
Splicing factor 3B subunit 3 isoform X1.
   
 0.995
Sf3b5
Splicing factor 3B subunit 5.
   
 0.993
Phf5a
PHD finger-like domain-containing protein 5A.
   
 0.990
Sf3b4
Splicing factor 3B subunit 4.
    
 0.984
Sf3b2
LOW QUALITY PROTEIN: splicing factor 3B subunit 2.
   
 0.983
Sf3a2
Splicing factor 3A subunit 2.
   
 0.961
Sf3b6
Pre-mRNA branch site protein p14.
   
  0.960
Dhx15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43.
   
 0.834
Zmat5
U11/U12 small nuclear ribonucleoprotein 20 kDa protein.
    
 0.813
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.