STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prdm8PR domain zinc finger protein 8. (675 aa)    
Predicted Functional Partners:
Bhlhe22
Class B basic helix-loop-helix protein 4/5.
   
  
 0.622
Antxr2
Anthrax toxin receptor 2.
   
 
 0.598
ENSCCNP00000026996
LOW QUALITY PROTEIN: visual system homeobox 1-like.
   
  
 0.533
Atp1b1
Sodium/potassium-transporting ATPase subunit beta-1.
   
  
 0.529
Syt16
Synaptotagmin-14/16.
      
 0.524
Ttll1
Probable tubulin polyglutamylase TTLL1.
      
 0.524
Slc32a1
Solute carrier family 32 (vesicular inhibitory amino acid transporter).
      
 0.524
Tmem79
Transmembrane protein 79.
   
  
 0.522
Tfcp2l1
Transcription factor CP2 and related proteins.
      
 0.520
Tmem215
Transmembrane protein 215.
      
 0.495
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.