STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trpm5Transient receptor potential cation channel subfamily M member 5. (1143 aa)    
Predicted Functional Partners:
Calhm1
Calcium homeostasis modulator protein 1.
      
 0.867
Gnat3
Guanine nucleotide-binding protein G(t) subunit alpha 3.
      
 0.793
Pkd2l1
Polycystic kidney disease 2-like 1 protein.
   
  
 0.784
Slc18a3
Vesicular acetylcholine transporter.
      
 0.764
Trpc6
Transient receptor potential cation channel subfamily C member 6.
    
0.721
Plcb2
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2.
   
 
 0.687
Calhm3
Calcium homeostasis modulator protein 3.
      
 0.619
ENSCCNP00000020474
annotation not available
 
   
 0.604
Ascl3
Achaete-scute complex protein.
      
 0.602
ENSCCNP00000008052
Serine/threonine-protein kinase DCLK1.
      
 0.596
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.