STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PapolaPoly(A) polymerase alpha isoform X1. (736 aa)    
Predicted Functional Partners:
Cpsf3
Cleavage and polyadenylation specificity factor subunit 3 isoform X1.
   
 0.896
Cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.895
ENSCCNP00000010983
Cleavage and polyadenylation specific factor 4.
    
 0.892
Sympk
LOW QUALITY PROTEIN: symplekin.
   
 0.890
Wdr33
LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33.
   
 0.887
Cpsf1
Cleavage and polyadenylation specificity factor subunit 1 isoform X1.
   
 0.887
Cstf3
Cleavage stimulation factor subunit 3 isoform X1.
    
 0.849
Fndc10
Fibronectin type III domain containing 10.
    
 
 0.802
Rbbp6
E3 ubiquitin-protein ligase RBBP6 isoform X1.
    
 
 0.796
Pabpn1
LOW QUALITY PROTEIN: polyadenylate-binding protein 2.
   
 0.787
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.