STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rft1Oligosaccharide translocation protein RFT1. (521 aa)    
Predicted Functional Partners:
Alg1
Chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1.
   
 
 0.764
Alg11
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase.
   
 
 0.740
Alg2
Alpha-1,3/alpha-1,6-mannosyltransferase.
   
 
 0.733
ENSCCNP00000014282
annotation not available
      
 0.591
Tor3a
Glycosaminoglycan xylosylkinase isoform X1.
      
 0.572
Acp6
Lysophosphatidic acid phosphatase type 6.
      
 0.567
Rbm28
LOW QUALITY PROTEIN: RNA-binding protein 28.
      
 0.562
ENSCCNP00000014324
Beta-1,4-N-acetylglucosaminyltransferase.
      
 0.552
Mrps18a
28S ribosomal protein S18a, mitochondrial.
      
 0.469
Ndufaf6
NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X1.
      
 0.468
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.