STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kdm5c[histone H3]-trimethyl-L-lysine4 demethylase. (1027 aa)    
Predicted Functional Partners:
Atp5c1
ATP synthase subunit gamma, mitochondrial isoform X1.
  
 0.857
ENSCCNP00000007491
annotation not available
 
 
 
 0.854
Atp5d
F-type H+-transporting ATPase subunit delta.
  
 0.774
ENSCCNP00000007866
annotation not available
  
 0.774
ENSCCNP00000007990
ATP synthase subunit O, mitochondrial-like.
  
 0.759
ENSCCNP00000032847
annotation not available
  
 0.759
ENSCCNP00000001083
annotation not available
  
 0.713
ENSCCNP00000025700
annotation not available
  
 0.713
Atp5a1
F-type H+-transporting ATPase subunit alpha.
  
 0.713
ENSCCNP00000000682
annotation not available
   
 0.677
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.