STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp43Ubiquitin carboxyl-terminal hydrolase 43 isoform X1. (1134 aa)    
Predicted Functional Partners:
Mysm1
LOW QUALITY PROTEIN: histone H2A deubiquitinase MYSM1.
   
 
 0.603
Yars
Tyrosine--tRNA ligase, cytoplasmic.
   
  
 0.578
Usp10
Ubiquitin carboxyl-terminal hydrolase 10 isoform X1.
    
 0.560
Pcna
Proliferating cell nuclear antigen.
   
  0.527
Mrps9
28S ribosomal protein S9, mitochondrial isoform X1.
   
 
 0.504
Rnf123
Kip1 ubiquitination-promoting complex protein 1.
   
 0.503
Polh
LOW QUALITY PROTEIN: DNA polymerase eta.
   
 
 0.498
Mrpl3
39S ribosomal protein L3, mitochondrial.
   
 
 0.498
Mrpl11
39S ribosomal protein L11, mitochondrial.
   
 
 0.494
Rfc5
Replication factor C subunit 3/5.
    
 0.491
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.