M4CET4_BRARP protein (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M4CET4_BRARP

Uncharacterized protein. (654 aa)

Predicted Functional Partners:

M4EIF1_BRARP

0.560

M4DXR3_BRARP

0.533

M4EMQ9_BRARP

0.528

M4D336_BRARP

0.527

M4DZC8_BRARP

0.527

M4DZI0_BRARP

0.525

M4EVQ2_BRARP

0.524

M4DLK9_BRARP

0.522

M4EH12_BRARP

0.522

M4DCA1_BRARP

0.521

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CET4_BRARP	M4D336_BRARP	M4CET4	M4D336	Uncharacterized protein.	Uncharacterized protein.	0.527
M4CET4_BRARP	M4DCA1_BRARP	M4CET4	M4DCA1	Uncharacterized protein.	Uncharacterized protein.	0.521
M4CET4_BRARP	M4DLK9_BRARP	M4CET4	M4DLK9	Uncharacterized protein.	Uncharacterized protein.	0.522
M4CET4_BRARP	M4DXR3_BRARP	M4CET4	M4DXR3	Uncharacterized protein.	Uncharacterized protein.	0.533
M4CET4_BRARP	M4DZC8_BRARP	M4CET4	M4DZC8	Uncharacterized protein.	Uncharacterized protein.	0.527
M4CET4_BRARP	M4DZI0_BRARP	M4CET4	M4DZI0	Uncharacterized protein.	Uncharacterized protein.	0.525
M4CET4_BRARP	M4EH12_BRARP	M4CET4	M4EH12	Uncharacterized protein.	Uncharacterized protein.	0.522
M4CET4_BRARP	M4EIF1_BRARP	M4CET4	M4EIF1	Uncharacterized protein.	Ubiquitinyl hydrolase 1.	0.560
M4CET4_BRARP	M4EMQ9_BRARP	M4CET4	M4EMQ9	Uncharacterized protein.	Uncharacterized protein.	0.528
M4CET4_BRARP	M4EVQ2_BRARP	M4CET4	M4EVQ2	Uncharacterized protein.	Uncharacterized protein.	0.524
M4D336_BRARP	M4CET4_BRARP	M4D336	M4CET4	Uncharacterized protein.	Uncharacterized protein.	0.527
M4D336_BRARP	M4DCA1_BRARP	M4D336	M4DCA1	Uncharacterized protein.	Uncharacterized protein.	0.498
M4D336_BRARP	M4DLK9_BRARP	M4D336	M4DLK9	Uncharacterized protein.	Uncharacterized protein.	0.520
M4D336_BRARP	M4DXR3_BRARP	M4D336	M4DXR3	Uncharacterized protein.	Uncharacterized protein.	0.521
M4D336_BRARP	M4DZI0_BRARP	M4D336	M4DZI0	Uncharacterized protein.	Uncharacterized protein.	0.521
M4D336_BRARP	M4EH12_BRARP	M4D336	M4EH12	Uncharacterized protein.	Uncharacterized protein.	0.505
M4DCA1_BRARP	M4CET4_BRARP	M4DCA1	M4CET4	Uncharacterized protein.	Uncharacterized protein.	0.521
M4DCA1_BRARP	M4D336_BRARP	M4DCA1	M4D336	Uncharacterized protein.	Uncharacterized protein.	0.498
M4DCA1_BRARP	M4DLK9_BRARP	M4DCA1	M4DLK9	Uncharacterized protein.	Uncharacterized protein.	0.527
M4DCA1_BRARP	M4DXR3_BRARP	M4DCA1	M4DXR3	Uncharacterized protein.	Uncharacterized protein.	0.459

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About