STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4CRR3_BRARPAMPK1_CBM domain-containing protein. (109 aa)    
Predicted Functional Partners:
M4EEE0_BRARP
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.754
M4CAW3_BRARP
WD_REPEATS_REGION domain-containing protein.
     
 0.719
M4ELQ7_BRARP
WD_REPEATS_REGION domain-containing protein.
     
 0.719
M4FH58_BRARP
Uncharacterized protein.
   
 0.712
M4DID6_BRARP
Uncharacterized protein.
  
 0.697
M4CUI8_BRARP
Uncharacterized protein.
  
 0.680
M4CGY3_BRARP
Uncharacterized protein.
    
 0.677
M4EBN0_BRARP
Uncharacterized protein.
    
 
 0.640
M4ENZ7_BRARP
Protein kinase domain-containing protein.
    
 
 0.640
M4EUU5_BRARP
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
 0.640
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.