STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4CTV2_BRARPTF-B3 domain-containing protein. (292 aa)    
Predicted Functional Partners:
M4CQW9_BRARP
Uncharacterized protein.
  
     0.534
M4EIK5_BRARP
BHLH domain-containing protein.
  
   
 0.520
M4ECM1_BRARP
Uncharacterized protein.
  
     0.516
M4E3H4_BRARP
FLZ-type domain-containing protein.
  
     0.507
M4EMI2_BRARP
BHLH domain-containing protein.
  
   
 0.504
M4EYQ8_BRARP
BHLH domain-containing protein.
  
     0.501
M4D395_BRARP
SBP-type domain-containing protein.
  
     0.499
M4DBM6_BRARP
PPC domain-containing protein.
  
     0.498
M4E6F0_BRARP
Uncharacterized protein.
  
     0.497
M4CNT6_BRARP
C2H2-type domain-containing protein.
  
     0.494
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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