STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4CYR7_BRARPUncharacterized protein. (724 aa)    
Predicted Functional Partners:
M4F8T1_BRARP
Ribosomal_L18_c domain-containing protein.
   
 
 0.967
M4CP86_BRARP
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.930
M4DFM6_BRARP
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.930
M4F462_BRARP
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.930
M4CQ00_BRARP
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
  
 
 0.927
M4E408_BRARP
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
  
 
 0.927
M4FIC4_BRARP
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
  
 
 0.927
M4D8V6_BRARP
KOW domain-containing protein.
   
 0.909
M4F4N8_BRARP
KOW domain-containing protein.
   
 0.909
M4D9Q5_BRARP
Ribosomal_L18_c domain-containing protein.
   
 
 0.906
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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