STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4D1F3_BRARPHP domain-containing protein. (973 aa)    
Predicted Functional Partners:
M4E352_BRARP
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 
 0.770
M4DHL4_BRARP
Uncharacterized protein.
    
 
 0.758
M4C9P9_BRARP
Cog4 domain-containing protein.
    
 
 0.646
M4DDX1_BRARP
Cog4 domain-containing protein.
    
 
 0.646
M4CPJ7_BRARP
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 
 0.624
M4E3K2_BRARP
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 
 0.624
M4E3K4_BRARP
Uncharacterized protein.
    
 
 0.624
M4D055_BRARP
Uncharacterized protein.
    
 
 0.603
M4D5H9_BRARP
DRY_EERY domain-containing protein.
      
 0.457
M4EXL8_BRARP
SEC7 domain-containing protein.
      
 0.456
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.