M4D2V7_BRARP protein (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M4D2V7_BRARP

Uncharacterized protein. (373 aa)

Predicted Functional Partners:

M4CTK7_BRARP

0.473

M4D7G7_BRARP

0.469

M4EBT0_BRARP

0.466

M4EZU8_BRARP

0.465

M4C8R1_BRARP

0.462

M4CUJ3_BRARP

0.460

M4DKX1_BRARP

0.458

M4EV10_BRARP

0.456

M4DIC7_BRARP

0.452

M4D956_BRARP

0.447

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C8R1_BRARP	M4CTK7_BRARP	M4C8R1	M4CTK7	Uncharacterized protein.	DUF641 domain-containing protein.	0.448
M4C8R1_BRARP	M4CUJ3_BRARP	M4C8R1	M4CUJ3	Uncharacterized protein.	Uncharacterized protein.	0.440
M4C8R1_BRARP	M4D2V7_BRARP	M4C8R1	M4D2V7	Uncharacterized protein.	Uncharacterized protein.	0.462
M4C8R1_BRARP	M4D7G7_BRARP	M4C8R1	M4D7G7	Uncharacterized protein.	Uncharacterized protein.	0.459
M4C8R1_BRARP	M4DIC7_BRARP	M4C8R1	M4DIC7	Uncharacterized protein.	Uncharacterized protein.	0.452
M4C8R1_BRARP	M4EV10_BRARP	M4C8R1	M4EV10	Uncharacterized protein.	PlsC domain-containing protein.	0.445
M4CTK7_BRARP	M4C8R1_BRARP	M4CTK7	M4C8R1	DUF641 domain-containing protein.	Uncharacterized protein.	0.448
M4CTK7_BRARP	M4CUJ3_BRARP	M4CTK7	M4CUJ3	DUF641 domain-containing protein.	Uncharacterized protein.	0.433
M4CTK7_BRARP	M4D2V7_BRARP	M4CTK7	M4D2V7	DUF641 domain-containing protein.	Uncharacterized protein.	0.473
M4CTK7_BRARP	M4D7G7_BRARP	M4CTK7	M4D7G7	DUF641 domain-containing protein.	Uncharacterized protein.	0.442
M4CTK7_BRARP	M4DIC7_BRARP	M4CTK7	M4DIC7	DUF641 domain-containing protein.	Uncharacterized protein.	0.418
M4CTK7_BRARP	M4EBT0_BRARP	M4CTK7	M4EBT0	DUF641 domain-containing protein.	PORR domain-containing protein.	0.435
M4CUJ3_BRARP	M4C8R1_BRARP	M4CUJ3	M4C8R1	Uncharacterized protein.	Uncharacterized protein.	0.440
M4CUJ3_BRARP	M4CTK7_BRARP	M4CUJ3	M4CTK7	Uncharacterized protein.	DUF641 domain-containing protein.	0.433
M4CUJ3_BRARP	M4D2V7_BRARP	M4CUJ3	M4D2V7	Uncharacterized protein.	Uncharacterized protein.	0.460
M4CUJ3_BRARP	M4DKX1_BRARP	M4CUJ3	M4DKX1	Uncharacterized protein.	Uncharacterized protein.	0.527
M4D2V7_BRARP	M4C8R1_BRARP	M4D2V7	M4C8R1	Uncharacterized protein.	Uncharacterized protein.	0.462
M4D2V7_BRARP	M4CTK7_BRARP	M4D2V7	M4CTK7	Uncharacterized protein.	DUF641 domain-containing protein.	0.473
M4D2V7_BRARP	M4CUJ3_BRARP	M4D2V7	M4CUJ3	Uncharacterized protein.	Uncharacterized protein.	0.460
M4D2V7_BRARP	M4D7G7_BRARP	M4D2V7	M4D7G7	Uncharacterized protein.	Uncharacterized protein.	0.469

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About