STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4D3M5_BRARPAAA domain-containing protein; Belongs to the AAA ATPase family. (443 aa)    
Predicted Functional Partners:
M4C8K9_BRARP
RPN13_C domain-containing protein.
   
 0.999
M4CDJ8_BRARP
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
0.998
M4CQP0_BRARP
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
0.998
M4D2N2_BRARP
VWFA domain-containing protein.
   
 0.998
M4D2Z6_BRARP
PCI domain-containing protein.
   
 0.998
M4DU86_BRARP
AAA domain-containing protein.
  
0.998
M4EU09_BRARP
PCI domain-containing protein.
   
 0.998
M4EXN6_BRARP
VWFA domain-containing protein.
   
 0.998
M4EZS3_BRARP
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.
   
 0.998
M4CAC3_BRARP
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
0.997
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.