STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4D604_BRARPMediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1888 aa)    
Predicted Functional Partners:
M4E7I2_BRARP
Uncharacterized protein.
  
 0.880
M4FB74_BRARP
MR_MLE domain-containing protein.
  
 
 0.848
M4C9U3_BRARP
Med12 domain-containing protein.
  
 
 0.839
M4F8C9_BRARP
Med12 domain-containing protein.
  
 
 0.837
M4F9I5_BRARP
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 
 0.834
M4C823_BRARP
Citrate synthase; Belongs to the citrate synthase family.
  
 0.832
M4CGM2_BRARP
Citrate synthase.
  
 0.832
M4CKI5_BRARP
Citrate synthase.
  
 0.832
M4CT74_BRARP
Citrate synthase.
  
 0.832
M4CT75_BRARP
Citrate synthase.
  
 0.832
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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