STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4D8L6_BRARPUncharacterized protein; Belongs to the peptidase S10 family. (101 aa)    
Predicted Functional Partners:
M4EFN0_BRARP
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 0.545
M4DAZ0_BRARP
Uncharacterized protein.
      
 0.497
M4D532_BRARP
Uncharacterized protein.
      
 0.495
M4FB17_BRARP
Uncharacterized protein.
      
 0.495
M4EYK0_BRARP
PPR_long domain-containing protein.
      
 0.489
M4D3L9_BRARP
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
      
 0.463
M4DC48_BRARP
Exocyst subunit Exo70 family protein; Component of the exocyst complex.
      
 0.457
M4C9Q0_BRARP
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.
      
 0.456
M4D3V6_BRARP
Uncharacterized protein; Belongs to the peptidase S8 family.
   
  
 0.411
M4E5Q8_BRARP
Uncharacterized protein; Belongs to the peptidase S8 family.
   
  
 0.411
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.