STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4DCE6_BRARPPMR5N domain-containing protein. (449 aa)    
Predicted Functional Partners:
M4E5Y8_BRARP
Uncharacterized protein.
      
 0.519
M4EC42_BRARP
Uncharacterized protein.
      
 0.499
M4CF13_BRARP
Histone acetyltransferase type B catalytic subunit.
      
 0.493
M4CRL8_BRARP
Histone acetyltransferase type B catalytic subunit.
      
 0.493
M4CHJ4_BRARP
TPT domain-containing protein.
      
 0.459
M4DGN7_BRARP
TPT domain-containing protein.
      
 0.459
M4DIS6_BRARP
TPT domain-containing protein.
      
 0.459
M4DHX1_BRARP
NAC domain-containing protein.
  
     0.455
M4CUV1_BRARP
NAC domain-containing protein.
  
     0.449
M4C904_BRARP
Uncharacterized protein.
  
     0.444
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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