STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4DDD6_BRARPUncharacterized protein. (305 aa)    
Predicted Functional Partners:
M4C7P9_BRARP
PAM2 domain-containing protein.
  
     0.521
M4EYQ4_BRARP
Uncharacterized protein.
  
     0.514
M4ER68_BRARP
Senescence domain-containing protein.
  
     0.513
M4FEM6_BRARP
Senescence domain-containing protein.
  
     0.507
M4F7I9_BRARP
Uncharacterized protein.
  
     0.504
M4DES9_BRARP
Uncharacterized protein.
  
     0.493
M4ECU5_BRARP
F-box domain-containing protein.
  
     0.491
M4CJB5_BRARP
Uncharacterized protein.
  
     0.489
M4CCA5_BRARP
Senescence domain-containing protein.
  
     0.487
M4DDN7_BRARP
Uncharacterized protein.
  
     0.484
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.