STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4DGF2_BRARPRRM domain-containing protein. (349 aa)    
Predicted Functional Partners:
M4EY38_BRARP
Nuclear cap-binding protein subunit 2.
    
 
 0.670
M4DPZ0_BRARP
Uncharacterized protein.
   
 
 0.658
M4D6I9_BRARP
U1snRNP70_N domain-containing protein.
   
 
 0.646
M4D2G8_BRARP
SAP domain-containing protein.
   
 
 0.632
M4D5T5_BRARP
Uncharacterized protein.
   
 
 0.632
M4E672_BRARP
RRM domain-containing protein.
  
  
0.623
M4F5B1_BRARP
Uncharacterized protein.
  
 
 0.613
M4E2W3_BRARP
Uncharacterized protein.
   
 
 0.597
M4DN99_BRARP
Uncharacterized protein.
  
 
 0.592
M4C7M0_BRARP
PRP38_assoc domain-containing protein.
    
 
 0.587
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.