STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4DHF3_BRARPLRRNT_2 domain-containing protein. (879 aa)    
Predicted Functional Partners:
M4DRI3_BRARP
Uncharacterized protein.
  
     0.490
M4DBT4_BRARP
Uncharacterized protein.
  
     0.483
M4EIR5_BRARP
Uncharacterized protein.
  
     0.481
M4FCN8_BRARP
Uncharacterized protein.
  
     0.479
M4CP22_BRARP
Uncharacterized protein.
  
     0.478
M4D1Z6_BRARP
TIR domain-containing protein.
  
 
  0.473
M4E5R5_BRARP
Uncharacterized protein.
  
     0.469
M4FCQ3_BRARP
TIR domain-containing protein.
  
 
  0.463
M4D290_BRARP
TIR domain-containing protein.
  
 
  0.458
M4DK76_BRARP
LRRNT_2 domain-containing protein.
  
 
  0.454
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.