STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4DRV0_BRARPAB hydrolase-1 domain-containing protein. (400 aa)    
Predicted Functional Partners:
M4F374_BRARP
Uncharacterized protein.
    
 0.696
M4F6M4_BRARP
PNPLA domain-containing protein.
    
 
 0.665
M4FJ12_BRARP
Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family.
    
 
 0.665
M4EEH2_BRARP
Isochorismatase domain-containing protein.
  
 0.535
M4DQR0_BRARP
Uncharacterized protein.
  
 
 0.474
M4E5K8_BRARP
PlsC domain-containing protein.
   
 
 0.466
M4FB74_BRARP
MR_MLE domain-containing protein.
     
 0.449
M4D8P1_BRARP
Uncharacterized protein.
      
 0.446
M4FCT6_BRARP
Uncharacterized protein.
      
 0.446
M4D7Y6_BRARP
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.