STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4DUL3_BRARPNPL domain-containing protein. (184 aa)    
Predicted Functional Partners:
M4DHT0_BRARP
CBF domain-containing protein.
   
    0.426
M4CSQ8_BRARP
RRM domain-containing protein.
   
   0.418
M4D0I0_BRARP
Nop domain-containing protein.
   
 
 0.414
M4DVQ7_BRARP
Nop domain-containing protein.
   
 
 0.414
M4F4V7_BRARP
Nop domain-containing protein.
   
 
 0.414
M4CB94_BRARP
Nop domain-containing protein.
   
 
 0.411
M4D1V5_BRARP
Uncharacterized protein.
   
 
 0.411
M4DBP5_BRARP
Uncharacterized protein.
   
 
 0.411
M4DRK5_BRARP
Uncharacterized protein.
   
 
 0.411
M4E1E7_BRARP
Uncharacterized protein.
   
 
 0.411
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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