STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4DZ48_BRARPDLH domain-containing protein. (239 aa)    
Predicted Functional Partners:
M4CN13_BRARP
DLH domain-containing protein.
  
  
 
0.900
M4EH17_BRARP
DLH domain-containing protein.
     
 
0.900
M4CE37_BRARP
Uncharacterized protein.
    
  0.581
M4F454_BRARP
Uncharacterized protein.
      
 0.505
M4FBZ3_BRARP
Uncharacterized protein.
      
 0.505
M4D2B5_BRARP
Uncharacterized protein.
      
 0.493
M4EMZ4_BRARP
Uncharacterized protein.
      
 0.489
M4CZM1_BRARP
Uncharacterized protein.
      
 0.485
M4ECJ5_BRARP
Uncharacterized protein.
      
 0.485
M4F8Y8_BRARP
Uncharacterized protein.
      
 0.485
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.