STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4E0H0_BRARPHomeobox domain-containing protein. (351 aa)    
Predicted Functional Partners:
M4FF61_BRARP
LOB domain-containing protein.
      
 0.518
M4F8A8_BRARP
Uncharacterized protein.
      
 0.495
K4GWY8_BRARP
Growth-regulating factor 1.
  
   
 0.486
M4F6V0_BRARP
Uncharacterized protein.
  
     0.476
M4F933_BRARP
PB1 domain-containing protein.
  
     0.473
M4ER52_BRARP
BHLH domain-containing protein.
  
     0.469
M4D8P4_BRARP
Uncharacterized protein.
  
     0.468
M4E0D9_BRARP
NAC domain-containing protein.
      
 0.465
M4CL60_BRARP
DUF4378 domain-containing protein.
  
     0.462
M4D2Y9_BRARP
Uncharacterized protein.
  
     0.462
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.