M4E4C4_BRARP protein (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

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protein homology

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[Homology]

Score

M4E4C4_BRARP

Uncharacterized protein. (121 aa)

Predicted Functional Partners:

M4CHP5_BRARP

0.481

M4DGZ6_BRARP

0.471

M4F9U4_BRARP

0.461

M4DEC2_BRARP

0.458

M4DEC1_BRARP

0.454

M4CS48_BRARP

0.451

M4CG34_BRARP

0.448

M4DEJ3_BRARP

0.444

M4DXC3_BRARP

0.438

M4EEH1_BRARP

0.437

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CG34_BRARP	M4CHP5_BRARP	M4CG34	M4CHP5	Uncharacterized protein.	Uncharacterized protein.	0.490
M4CG34_BRARP	M4DEJ3_BRARP	M4CG34	M4DEJ3	Uncharacterized protein.	Uncharacterized protein.	0.512
M4CG34_BRARP	M4DGZ6_BRARP	M4CG34	M4DGZ6	Uncharacterized protein.	Uncharacterized protein.	0.487
M4CG34_BRARP	M4DXC3_BRARP	M4CG34	M4DXC3	Uncharacterized protein.	Uncharacterized protein.	0.479
M4CG34_BRARP	M4E4C4_BRARP	M4CG34	M4E4C4	Uncharacterized protein.	Uncharacterized protein.	0.448
M4CG34_BRARP	M4EEH1_BRARP	M4CG34	M4EEH1	Uncharacterized protein.	Uncharacterized protein.	0.479
M4CHP5_BRARP	M4CG34_BRARP	M4CHP5	M4CG34	Uncharacterized protein.	Uncharacterized protein.	0.490
M4CHP5_BRARP	M4CS48_BRARP	M4CHP5	M4CS48	Uncharacterized protein.	Uncharacterized protein.	0.495
M4CHP5_BRARP	M4DEC1_BRARP	M4CHP5	M4DEC1	Uncharacterized protein.	Uncharacterized protein.	0.494
M4CHP5_BRARP	M4DEC2_BRARP	M4CHP5	M4DEC2	Uncharacterized protein.	Uncharacterized protein.	0.493
M4CHP5_BRARP	M4DEJ3_BRARP	M4CHP5	M4DEJ3	Uncharacterized protein.	Uncharacterized protein.	0.528
M4CHP5_BRARP	M4DXC3_BRARP	M4CHP5	M4DXC3	Uncharacterized protein.	Uncharacterized protein.	0.463
M4CHP5_BRARP	M4E4C4_BRARP	M4CHP5	M4E4C4	Uncharacterized protein.	Uncharacterized protein.	0.481
M4CHP5_BRARP	M4EEH1_BRARP	M4CHP5	M4EEH1	Uncharacterized protein.	Uncharacterized protein.	0.464
M4CHP5_BRARP	M4F9U4_BRARP	M4CHP5	M4F9U4	Uncharacterized protein.	Uncharacterized protein.	0.530
M4CS48_BRARP	M4CHP5_BRARP	M4CS48	M4CHP5	Uncharacterized protein.	Uncharacterized protein.	0.495
M4CS48_BRARP	M4DEJ3_BRARP	M4CS48	M4DEJ3	Uncharacterized protein.	Uncharacterized protein.	0.513
M4CS48_BRARP	M4DGZ6_BRARP	M4CS48	M4DGZ6	Uncharacterized protein.	Uncharacterized protein.	0.488
M4CS48_BRARP	M4DXC3_BRARP	M4CS48	M4DXC3	Uncharacterized protein.	Uncharacterized protein.	0.469
M4CS48_BRARP	M4E4C4_BRARP	M4CS48	M4E4C4	Uncharacterized protein.	Uncharacterized protein.	0.451

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